Functionals linear in curvature and statistics of helical proteins
نویسندگان
چکیده
The free energy of globular protein chain is considered to be a functional defined on smooth curves in three dimensional Euclidean space. From the requirement of geometrical invariance, together with basic facts on conformation of helical proteins and dynamical characteristics of the protein chains, we are able to determine, in a unique way, the exact form of the free energy functional. Namely, the free energy density should be a linear function of the curvature of curves on which the free energy functional is defined. This model can be used, for example, in Monte Carlo simulations of exhaustive searching the native stable state of the protein chain.
منابع مشابه
Functionals linear in curvature and protein folding
The free energy of globular protein chain is considered to be a functional defined on smooth curves in three dimensional Euclidean space. From the requirement of geometrical invariance, together with basic facts on conformation of helical proteins and dynamical characteristics of the protein chains, we are able to determine, in a unique way, the exact form of the free energy functional. Namely,...
متن کاملThe effect of Geometrical parameters on heat transfer coefficient in helical double tube exchangers
Helical coil heat exchangers are widely used in industrial applications ranging fromcryogenic processes, air-conditioning, and nuclear reactors to waste heat recovery due totheir compact size and high heat transfer coefficient. In this kind of heat exchangers, flowand heat transfer are complicated. This paper reports a numerical investigation of theinfluence of different parameters such as coil...
متن کاملبررسی تمایل مجاورت اسیدهای آمینه با یکدیگر در مارپیچهای آلفا
In order to study the tendency of amino acid neighbors in helical structures, proteins with known structures were carefully analyzed. The studied helical positions: N , Ncap, N1, N2, N3, N4, M, C4, C3, C2, C1, Ccap, C and their doublet counterparts: N Ncap, NcapN1, N1N2, N2N3, N3N4, M1M2, M2M3, C4C3, C3C2, C2C1, C1Ccap, CcapC were carefully analyzed. The propensity for all amino acids i...
متن کاملAlmost multiplicative linear functionals and approximate spectrum
We define a new type of spectrum, called δ-approximate spectrum, of an element a in a complex unital Banach algebra A and show that the δ-approximate spectrum σ_δ (a) of a is compact. The relation between the δ-approximate spectrum and the usual spectrum is investigated. Also an analogue of the classical Gleason-Kahane-Zelazko theorem is established: For each ε>0, there is δ>0 such that if ϕ is...
متن کاملDNA phosphate crowding correlates with protein cationic side chain density and helical curvature in protein/DNA crystal structures
Sequence-specific binding of proteins to their DNA targets involves a complex spectrum of processes that often induce DNA conformational variation in the bound complex. The forces imposed by protein binding that cause the helical deformations are intimately interrelated and difficult to parse or rank in importance. To investigate the role of electrostatics in helical deformation, we quantified ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2002